PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa14g007550.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 166aa    MW: 18546.3 Da    PI: 4.1494
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa14g007550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-1982132255
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr ++ +g+++AeIrd    + k  r++lg+f+taeeAa a+++a+ +l+g
  Csa14g007550.1  82 SYRGVRKRP-WGKYAAEIRDsT--R-KGIRVWLGTFDTAEEAALAYDQAAFALKG 132
                     69*******.**********32..2.24***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.44E-3181142No hitNo description
SuperFamilySSF541714.58E-2382142IPR016177DNA-binding domain
PfamPF008471.0E-1382132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-3082140IPR001471AP2/ERF domain
PROSITE profilePS5103223.07782140IPR001471AP2/ERF domain
SMARTSM003801.7E-3882146IPR001471AP2/ERF domain
PRINTSPR003672.2E-118394IPR001471AP2/ERF domain
PRINTSPR003672.2E-11106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MESQASFLSG EFSPENSSSS SWSSQESFLW EESFLHQSFD QSFLLSSTPT YYSDDFLTFG  60
SSIIKEEEGA TITAEEEEEE KSYRGVRKRP WGKYAAEIRD STRKGIRVWL GTFDTAEEAA  120
LAYDQAAFAL KGSLAVLNFP VDVVKESLRK MENVNLNDGE SPFSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2881143466ATERF1
3gcc_A2e-2881143466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0110011e-157BT011001.1 Arabidopsis thaliana At1g06160 gene, complete cds.
GenBankBT0149581e-157BT014958.1 Arabidopsis thaliana At1g06160 gene, complete cds.
GenBankCP0026841e-157CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF9P141e-157AC025290.3 Sequence of BAC F9P14 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010457737.11e-115PREDICTED: ethylene-responsive transcription factor ERF094-like
SwissprotQ9LND11e-69ERF94_ARATH; Ethylene-responsive transcription factor ERF094
TrEMBLA0A0D3DYS49e-82A0A0D3DYS4_BRAOL; Uncharacterized protein
STRINGBra032433.1-P3e-81(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06160.14e-50octadecanoid-responsive Arabidopsis AP2/ERF 59